rs50762774 SNP Detail

Summary

• ID
  rs50762774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18997724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAGGTTG GCCTCGAACT CAGAGATCCA CCTGCCTCTG
  CCTCTTGAGT GCTGGGACTA AAGGCATGAA CTACCACACT GGCTGCGTTT TGTTTTTGTT
  Y
  TTTAAAATTT CATATGTATG GGTGTTTTGC CTATACATGT ATTTCTGTGT ACCACATATG
  TGCCAAGTGC CCACAAAGGC CAGATGTCAG ACCCCTTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148471780	ENSMUSSNP1366466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322116782	CHEV_7_19849148	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50762774					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18997724 () rs orientation: forward

Symbol	Name	Function Class
Tssr70882	transcription start site region 70882	1740 bp upstream
Tssr70883	transcription start site region 70883	670 bp downstream
Tssr70884	transcription start site region 70884	1011 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates