rs50765316 SNP Detail

Summary

• ID
  rs50765316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98938727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAGACTA GTTCTTCCTG AAGCTGGGGG GAACGGGGTG
  GGGCGCTAGC TAGGATGACA ACCAGATGTC TGTATTGACC ACAGTGCATG ATTGGAGAAA
  R
  TTGGACAGCC AGGTAAGGGG GGGGGGGGTC AAATAAATCT GTTTCCGGCT ACCATGACAT
  CCTAGAACAC CTGAAGGGTT CATTTTCCAA GCCTGCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148463554	ENSMUSSNP1949940	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325079645	CHEV_15_98871277	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50765316					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98938727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	476 bp distal
Gm41399	predicted gene, 41399	390 bp upstream
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	318 bp distal
Rr509291	regulatory region 509291	340 bp distal
Rr509292	regulatory region 509292	155 bp proximal
Rr509293	regulatory region 509293	1606 bp proximal