rs50766559 SNP Detail

Summary

• ID
  rs50766559
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135251594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTA GTGGAAAGCC CTTCTATGAA
  A
  GAAGCCAGAC CTGTTGCAAC AGTAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145530733	ENSMUSSNP1517322	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319989128	CHEV_1_137220433	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50766559					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135251594 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	within coordinates
Lmod1	leiomodin 1 (smooth muscle)	957 bp upstream
Rr12584	regulatory region 12584	807 bp proximal
Rr28593	regulatory region 28593	606 bp proximal
Tssr8958	transcription start site region 8958	914 bp upstream
Tssr8959	transcription start site region 8959	966 bp upstream