rs50767504 SNP Detail

Summary

• ID
  rs50767504
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168430563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC TATCTCAGTG CTTCTACAAA
  T
  GGAAAACTGG AACCCCCAAA TAAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148270594	ENSMUSSNP5897204	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320609876	CHEV_2_168414143	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50767504					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168430563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12775	CpG island 12775			1035 bp proximal
Nfatc2	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2			Intron
				Noncoding-Transcript-Variant
Rr571024	regulatory region 571024			1726 bp distal
Rr571025	regulatory region 571025			1171 bp distal
Rr571026	regulatory region 571026			within coordinates
Rr571027	regulatory region 571027			1538 bp proximal
Tssr21877	transcription start site region 21877			1798 bp upstream
Tssr27851	transcription start site region 27851			1648 bp downstream
Tssr27852	transcription start site region 27852			1672 bp downstream