rs50767625 SNP Detail

Summary

• ID
  rs50767625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87323232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTAGGC TTGACTAGGA
  ATATGATTGC TTGATGCCTT GTACGTCTCT TTAAGGTGAA AGAAGGAAAG AATTTTCTTA
  AGGCTTGCTT TAGTGATCTG TAGGGGTCTT GTATGTGTGA TGAAGTGGAA TAAAACAATA
  TTCAGAGTAC ATGATCTGTA ACTCAGTACT GAAATTGTAT TTACCTGGAA GATGTCAGCA
  R
  TCCAGCTTGT AGCAGCTTCC ACTTGAGCTG AAAAGTATGG CCTTGTGTGA TACCTAGTGA
  ACAGTATTTT CTTCTCCTCT GTTAGCTGCC AATTTAAAAA CTTTGATCAA ATGTTACACA
  TAAGAGGATC TGAAAAACAA AGACACTGTT TGTTTGAAGT AAGAGCTTGG AAAGGCCTGC
  TGGGAAAGTT ATGAATGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60763785	NES16401426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50767625					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60763785	NES16401426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87323232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gigyf2	GRB10 interacting GYF protein 2			Intron
				Noncoding-Transcript-Variant
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13			781 bp upstream
Rr414787	regulatory region 414787			792 bp distal
Rr414788	regulatory region 414788			623 bp distal
Rr414789	regulatory region 414789			1742 bp proximal
Tssr12853	transcription start site region 12853			776 bp upstream