rs50768324 SNP Detail

Summary

• ID
  rs50768324
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52202099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTCTT TATTTGACCT
  TCCCGGAAGG CCGTGGGAAC TCCACGGAAG GCAGGATGCC CCAGGGCCTT TGATCACATC
  TCCACTTTAT TTGAATAAAT CTGGCAAAGG GACCCAAAGC CCGCATCCTC ATCTTGGGCA
  GGATTTCCGC CGCCACCTTC CAAAAGCAAG AAATGGAGGG AATCTGAGGT CTCCCCAAAC
  K
  TCCCGGGTCA GATTGCCCGA CTGACGTTGC TGCCACAGTT TGTGAACAAT CTAGCTGCAC
  AAAAGACTTC TCTGCGCTGC TTTCGAAGAA CCGCCCAAAG TCTGTCTGTC CTAGGCCAGG
  GCAGCTTAGG AGAGGGGCGG CGGGTCTCCG CTCTACTCGC CCGCCCGCCC CGCCCCCTCA
  CTGCAGCAGC CTCCTCCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60886890	NES15970088	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	T	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50768324					SNP	T	G	T	G	T	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886890	NES15970088	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52202099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17430	CpG island 17430	612 bp distal
Cpgi17431	CpG island 17431	11 bp proximal
Gm57855	predicted gene, 57855	within coordinates
Hoxa9	homeobox A9	within coordinates
Rr146300	regulatory region 146300	within coordinates
Tssr61006	transcription start site region 61006	508 bp upstream
Tssr61007	transcription start site region 61007	97 bp downstream
Tssr61008	transcription start site region 61008	118 bp downstream
Tssr61009	transcription start site region 61009	703 bp downstream
Tssr61010	transcription start site region 61010	826 bp downstream
Tssr61011	transcription start site region 61011	1026 bp downstream
Tssr61012	transcription start site region 61012	1046 bp downstream