rs50768798 SNP Detail

Summary

• ID
  rs50768798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA AGAGGATGTC TTCAGTCTGT
  Y
  GCTATATGAA AACCCTCTCA TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136622067	ENSMUSSNP4442190	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323002564	CHEV_9_72378091	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50768798					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437566 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	1184 bp proximal
Rfx7	regulatory factor X, 7	1956 bp upstream
Rr401508	regulatory region 401508	73 bp upstream
Rr401509	regulatory region 401509	1335 bp upstream
Rr682766	regulatory region 682766	within coordinates
Rr682767	regulatory region 682767	116 bp proximal
Rr682768	regulatory region 682768	193 bp proximal
Rr682769	regulatory region 682769	866 bp proximal
Rr682770	regulatory region 682770	1466 bp proximal
Rr682771	regulatory region 682771	1667 bp proximal
Tssr86008	transcription start site region 86008	1444 bp upstream
Tssr86009	transcription start site region 86009	1649 bp upstream
Tssr86010	transcription start site region 86010	1900 bp upstream
Tssr86011	transcription start site region 86011	1930 bp upstream