rs50768835 SNP Detail

Summary

• ID
  rs50768835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31769169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTGATCT CTCGATGTCG
  GTTCTAATTT CAGAATCTGG TAATCGTGGC CTGACTTGTT TTGCAGGTGG AAATGAGTTC
  CCAGCAGTTT CCTCGGTTAG GAACCCCTTC CCCTGGGCTT AGCCAGCCAC CTTCACAGAT
  TGCAAGCAGT GGTTCCGCAG GACTGATAAA CCAAGTTGCC ACAGGTAAGA TAAGTCACAG
  Y
  TCTTTTGTAT TGCTTACTGT TTGAAGAATG TCACTATCTT CAAATTAGCA AACTCCTTTT
  CATAATTACT GTCTTATCGA CTTTGAGGAA AGGATGTGTC AATACACTTA AAATAAGGCA
  TTTCCCTCTC TTTTTTAAAA AATCATTTAT GTATGCTAGG CTAAGTGCAA CTTTAGTAAA
  CCATACTTGT AAGAACCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012820	NES17430069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50768835					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012820	NES17430069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31769169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	661 bp distal
Gm58914	predicted gene, 58914	1132 bp upstream
Rr370349	regulatory region 370349	1499 bp downstream
Rr405571	regulatory region 405571	1672 bp downstream
Rr405572	regulatory region 405572	1018 bp downstream
Rr535278	regulatory region 535278	1926 bp distal
Rr535279	regulatory region 535279	1723 bp distal
Rr535280	regulatory region 535280	1143 bp distal
Rr535281	regulatory region 535281	1635 bp distal
Rr535282	regulatory region 535282	642 bp distal
Sap130	Sin3A associated protein	within coordinates
Tssr150348	transcription start site region 150348	1753 bp downstream
Tssr150349	transcription start site region 150349	1745 bp downstream
Tssr150350	transcription start site region 150350	1726 bp downstream
Tssr150351	transcription start site region 150351	978 bp downstream
Tssr152716	transcription start site region 152716	1305 bp upstream