rs50769170 SNP Detail

Summary

• ID
  rs50769170
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:66902017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG GTCGCACTAC TCGGTGGCAG
  C
  GCGCCCAGGG GGTGATCGCT CCCGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144520353	ENSMUSSNP2374392	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319758735	CHEV_1_66909432	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50769170					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66902017 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	Intron
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	729 bp distal
Rr412478	regulatory region 412478	within coordinates
Rr412479	regulatory region 412479	409 bp proximal
Tssr12011	transcription start site region 12011	396 bp downstream
Tssr12012	transcription start site region 12012	407 bp downstream
Tssr12013	transcription start site region 12013	437 bp downstream
Tssr12014	transcription start site region 12014	442 bp downstream
Tssr12015	transcription start site region 12015	459 bp downstream
Tssr12016	transcription start site region 12016	483 bp downstream