rs50769600 SNP Detail

Summary

• ID
  rs50769600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:21347569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAAATA TAGTTCCTGA
  TATGACTGTT GCCATTTATG TAAATTTATG TAAATAAATA AGGTGAAAAT AAAACATGTC
  AGAACTCTAC TCTTTTATCA GTGGAGTGAC TGTTTTGCTC AGTCCGGTAA CAGGTTTTTT
  TTTATTATTT TCTTTTAGTT AGTATACAAG ATAATGGGTT TCACCTTGAC ATTTTCATAT
  R
  TATGTGCAAT ACTGTATACC CACACATCCA TACCTCCTCC AACACATAGC CTTAACCATT
  ACTCTCTCTT GTCACTCCTT ATAGGTAACG ACTTTTGAAT AATAACAACA ATCATAAACT
  GTTCCCCTTT CCCATTACAA TGTAATGCCT ACACAAGATG CTGTGTGTGA GCGTGAACCA
  CAGTGTGTGT GTTAGAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss63676858	NES17069227	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50769600					SNP	A	A	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63676858	NES17069227	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:21347569 () rs orientation: forward

Symbol	Name	Function Class
D16Mit208	DNA Segment, Chr 16 Massachusetts Institute of Technology 208	1668 bp proximal
Gm60958	predicted gene, 60958	1190 bp upstream
Rr326065	regulatory region 326065	170 bp distal
Tssr137513	transcription start site region 137513	1348 bp downstream
Vps8	VPS8 CORVET complex subunit	within coordinates