rs50769776 SNP Detail

Summary

• ID
  rs50769776
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109561902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGTCTCA AATGAGTCTT CAGAGGGTTC TATCATGTCG
  TCGGTTGGAA AGGAGTGTGC TCTGAAGACT GGTAAGATTG TGATGTGTGT GGTCAGAGAC
  M
  GCAACTGTGG AGACCAAAAC CTAGGGACAG AGGGATAAAA GACAGGAGAA AATGTAGCAA
  TTTAGGTTCT CAAGATGGCA GGGTCAGATT CTATCTCAAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61717603	NES17648117	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50769776					SNP	C	C	C	C	C	A	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61717603	NES17648117	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109561902 () rs orientation: forward

Symbol	Name	Function Class
1110006E14Rik	RIKEN cDNA 1110006E14 gene	337 bp upstream
Mir136	microRNA 136	80 bp downstream
Mir432	microRNA 432	438 bp downstream
Mir434	microRNA 434	869 bp downstream
Mir3071	microRNA 3071	71 bp upstream
Mirc43	microRNA cluster 43, including Mir341 through Mir1188	within coordinates
Rr472784	regulatory region 472784	117 bp proximal
Rtl1	retrotransposon Gaglike 1	within coordinates
Tssr115135	transcription start site region 115135	77 bp downstream
Tssr117754	transcription start site region 117754	1625 bp downstream