rs50769902 SNP Detail

Summary

• ID
  rs50769902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45653930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTAGAG TGAAGGCAGA
  GCCCATAGTG CTTGCTAACT TCGTTAAGAC TGAAGGCATT GAAGAAACTG TGTTGGGTGT
  CCTAGGGAGG AGCGGGAGAG GAATGGAGAC ACTATCTAGA GAACACTGGT GAGGTAGGGG
  GTGAAAATGA GTTTTCGAGA CTCTAAAAAG GAGATGGAGC TTTCTCTAAA CCTCTTGTCA
  Y
  GCCCATGTTT CCACATTAGC ACCTAGAAAA TGTGGTGCAC AGATCAGCAG GATACCCTCA
  GATGGTGACA AAATATGATG TCCTAGTTAG GGTTCCACTG CTGTGAAGAG ATACTATGAC
  CAATGCAACT CGTATAAAGG TAATCTTTTA ACTGGGCCTG GCTCACAGTT TCGGAGGTTC
  AGTCCATTAT CATCATGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52634656	NES15450832	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50769902					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52634656	NES15450832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45653930 () rs orientation: forward

Symbol	Name	Function Class
Rr283739	regulatory region 283739	within coordinates
Rr283740	regulatory region 283740	1472 bp proximal