rs50770465 SNP Detail

Summary

• ID
  rs50770465
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152584721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCACGGG CTTACAGAGA
  CACTTGCAGA TCAGTAGCAG TGGCAATGTT TTCTTCAACA GCCAAACGGA GAGAATAAGT
  GCAGTGTCCA TGGTGGATAA GGAACATTAT GTGCGTGCCC CAACAGTGGT GCACATCTGG
  GCTTAGACAG AAAGGACACT CAGATATCAC CCTGCCACAT GTATGAACTC TGGAACCATG
  C
  TAAATAAAGC AATCCTGAAG CAGAAAGACA AATACTGTAT CAGCTTCCTC CTCTTCCTCC
  TCCTTCTCCA CTGAGGGACC CAGAACAGTC AAAGTCACAG AGATTCAAGG GAGACTAGTG
  GTTCGTGGGG GTTGAGGGGA GAGGGGATGG ACAGTTGTCC TTGGGCAGCC ACACGACTTC
  TGCTTAGGAT GATGGTAACG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136104267	ENSMUSSNP4356277	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321029022	CHEV_3_152542048	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50770465					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152584721 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	480 bp proximal
Rr79922	regulatory region 79922	880 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates