rs50770617 SNP Detail

Summary

• ID
  rs50770617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTTGTC TTCCCTTTGA
  GTCGCCCAGA AATCTGGAGC GCGGAGCTTT CCTTTCGAGA GCTTTATGCT CAGATTCAAC
  CTGAGTATAA ATAATCCTGA TTTTAAGGCT CTGGCTAACT TTCAGATTCA TAGTCAGGAT
  GATTGCCTGG CAATACTTAA GACAATTTGA ATTTTAGTTC AGGGGCATCT GTCATAGGGT
  Y
  CAGTTGCTAA AGCAGGTCAA ACCAAAGAGA GCTTACCTGT TGCTTGGACA GACACACTAC
  ATTTCTCTGT TTTTTTCCTG TTCTGAGTGC CATTGAATTC TGCTCTTACC ATTATGTTTT
  TCTCCTGTCT GCTGGGTTTT GCACTTTGTA GACAGCCCTA GACCTTCAGA GGCCTTCTCT
  GAGATTTGCT ACTCCATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63158205	NES17453872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50770617					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63158205	NES17453872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055380 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	within coordinates
Gm50119	predicted gene, 50119	1747 bp downstream
Gm58551	predicted gene, 58551	626 bp upstream
Rr393825	regulatory region 393825	1904 bp upstream
Rr539635	regulatory region 539635	637 bp distal
Rr539636	regulatory region 539636	136 bp distal
Rr539637	regulatory region 539637	275 bp distal
Rr539638	regulatory region 539638	229 bp distal