rs50770707 SNP Detail

Summary

• ID
  rs50770707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55909238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCTTG TAAGACCCGA
  AGTCTTCAGG CTGGATCGGC CTCCAGAGCT CAAAGCCTCC CGGGGTCCCC CTAGTTCCCA
  TCAAGCCTCG CGCAGGGCCC CGAGGGTGTC AGCCCTCCAA GTTCAGGAAA GGCATGGTTT
  TCCTTCCCGC CTCTCCCTTA AGGCGCAGCG GCCAACCCTG CACCGAGTCT TGGAAAGTCT
  R
  GAAACGCTCC CACCTTCACT TTAATTAGCA TCTTCTTCCC AGGTTGGGGT TGCAGGCGGC
  TAGAGTGCTG CTTCTCCCGC TGTGGTCGCT GCTGCCGCTG CCGCTTCCCA GCACTCCACG
  GCAAGGAACA CTTCTGCTTC CGGGTCACTC TCTGGACCCA CCCTCTCCTC TTTCCACCGG
  GTTCCCGAAA CGCTCAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405526	NES17238143	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50770707					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405526	NES17238143	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55909238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	within coordinates
Gmpr2	guanosine monophosphate reductase 2	160 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	within coordinates
Rr492563	regulatory region 492563	253 bp proximal
Rr492564	regulatory region 492564	333 bp proximal
Tssr125802	transcription start site region 125802	629 bp downstream
Tssr125803	transcription start site region 125803	469 bp upstream
Tssr125804	transcription start site region 125804	527 bp upstream
Tssr125805	transcription start site region 125805	590 bp upstream
Tssr128855	transcription start site region 128855	77 bp downstream
Tssr128856	transcription start site region 128856	92 bp downstream
Tssr128857	transcription start site region 128857	283 bp downstream
Tssr128858	transcription start site region 128858	355 bp downstream
Tssr128859	transcription start site region 128859	388 bp downstream
Tssr128860	transcription start site region 128860	412 bp downstream