rs50771148 SNP Detail

Summary

• ID
  rs50771148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80308761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCACATGG CAGCTCAGTC CTATCTGTAA CTCCAGTTCC
  AGGGCTTCTA ATACTATCAC ACAGATGTGC ATGCAGCCAA AAAGAAAAAG GGGGGGGGGG
  R
  AAACATAAAA GGAAAAGAAA TGTCATGTGA CTACTCACGC TGTTGAGAAA ATCCTGACAG
  GAAAATGAAG TCTCCAGGGT CAGCAATCCC CAGCCCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss137916886	ENSMUSSNP7159790	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324110784	CHEV_12_81362974	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50771148					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80308761 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	1616 bp upstream
Cpgi4813	CpG island 4813	935 bp distal
Gm47766	predicted gene, 47766	419 bp downstream
Rr468867	regulatory region 468867	1907 bp distal
Rr468869	regulatory region 468869	1126 bp distal
Tssr116876	transcription start site region 116876	1778 bp upstream
Tssr116877	transcription start site region 116877	1662 bp upstream
Tssr116878	transcription start site region 116878	1635 bp upstream
Tssr116879	transcription start site region 116879	1616 bp upstream
Tssr116880	transcription start site region 116880	1587 bp upstream
Tssr116881	transcription start site region 116881	1482 bp upstream
Tssr116882	transcription start site region 116882	1444 bp upstream