rs50771405 SNP Detail

Summary

• ID
  rs50771405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43423711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCTCTAA AGAGAGTAGC
  CATTGCTCTT AACTGCTGAA CCATGTCTCC AGCCCCAGCT TTGGCCTTCT CATGAACTGG
  ATATAAATGG CCAGAGTGGG GGTGGTGTGC TATGCCTGAC TGCGCTGTAT AGCCATCTGT
  TCTGTCTGCT ATGGGATGCC AGTATGTTTT ATTGTTTCAG AGACAGTCCA AGGTGAGTCT
  R
  GAGATGAAAC AACCCAGCTA CAGTCGTTGG CTAGTCCCAC CCCACTGGTC CTGTCTCCAC
  ATTCTCTTCA GAAGGCAGAA AAGAAGGCAT TCTTGCTTAA AAAAATGCCT AAGAGGGGAC
  CTAGTGTGCT GGGAACCTGG TGTGCTGACC CCAAAGCACA GGATGGTAGC CTTTTCCAAC
  ATCCCCTTGG CAGTTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61001524	NES16126581	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50771405					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61001524	NES16126581	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43423711 () rs orientation: forward

Symbol	Name	Function Class
Klk11	kallikrein related-peptidase 11	330 bp upstream
Klk12	kallikrein related-peptidase 12	706 bp downstream
Tssr66041	transcription start site region 66041	321 bp upstream
Tssr66042	transcription start site region 66042	337 bp upstream
Tssr66043	transcription start site region 66043	355 bp upstream
Tssr66044	transcription start site region 66044	365 bp upstream
Tssr66045	transcription start site region 66045	1979 bp upstream