rs50771904 SNP Detail

Summary

• ID
  rs50771904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC AGTTCTTCTG CAGTTGCTGA
  R
  ATGTTTTCCT GTGGCTGTGT CCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60550705	NES16573583	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	G	A	A	G	A		A		A	A		G
ss145329875	ENSMUSSNP1089659	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A					A
ss325326677	CHEV_17_23780368	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50771904					SNP	A	A	A	G	A	A	G	A	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60550705	NES16573583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	1147 bp proximal
Gm7773	predicted gene 7773	257 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	1025 bp proximal
Tssr142937	transcription start site region 142937	1188 bp downstream
Tssr146619	transcription start site region 146619	1635 bp upstream
Tssr146620	transcription start site region 146620	1552 bp downstream
Tssr146621	transcription start site region 146621	1578 bp downstream
Tssr146622	transcription start site region 146622	1598 bp downstream
Tssr146623	transcription start site region 146623	1646 bp downstream
Tssr146624	transcription start site region 146624	1665 bp downstream
Tssr146625	transcription start site region 146625	1831 bp downstream
Tssr146626	transcription start site region 146626	1863 bp downstream