rs50774224 SNP Detail

Summary

• ID
  rs50774224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21873713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCTGTA GTTGAAGTCC
  ATCCCGGAGC TCGCCGCTTC CTCCCAGAAA CACACCAAGT CTTCCAAGCG TTGGGTGAAG
  CACAGAAGTT CTTCGGAGCC CCGGGATGCC AGCAGGGCCG CTAGAAAAGG GGATAGCCAT
  GGCGGGGGGA GGGGGAGATC AGGGAAGCCC AGGTCTGCCT TCCACGGTGC CCTTACCCTC
  Y
  CTCTTGTCGC CTGTGCAGAT CCGATAATTT TAGTGCCCCG CCCTCTTCTC CAAAAGGGCC
  TTCGAGGGGT CTTGCAAAAG TGGCGCCTCA GAACTCCCAA GAGTAGCGAC CCCGCCTGCC
  TTGTTCTACT CCTCCGTGCG CACGCCCACT CACCCTGCAA GTTGAGCGCT GTTCGCCCCG
  CCCTAGCGGG TGTGTGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61359790	NES16733458	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50774224					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359790	NES16733458	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21873713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	1507 bp distal
Cpgi21465	CpG island 21465	within coordinates
D9Mit86	DNA segment, Chr 9, Massachusetts Institute of Technology 86	1552 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	1560 bp distal
Rr675080	regulatory region 675080	879 bp distal
Rr675081	regulatory region 675081	845 bp distal
Rr675082	regulatory region 675082	1079 bp proximal
Tssr2805	transcription start site region 2805	93 bp upstream
Tssr88426	transcription start site region 88426	50 bp upstream
Tssr88427	transcription start site region 88427	20 bp upstream
Tssr88428	transcription start site region 88428	1126 bp downstream
Tssr88429	transcription start site region 88429	1151 bp downstream
Tssr88430	transcription start site region 88430	1178 bp downstream