rs50774239 SNP Detail

Summary

• ID
  rs50774239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTTAA TTCACACAAC
  CTCCAGAAAC AGGACACAGT CTTATTACAC ACCAAACATC TTTTATTTAA TATAAAATAT
  TCAATTTTCA AAAATTAAAA GCGAAGATTC CCTGTAAGTT GACCAGAGAC GATCTCAACC
  ACTACAGTAC CTGCAAGAAA AAAAAAAAGG CCCATTACAG AATATCCGTG ACTATACTAC
  R
  GGCTGTTTAC TTATGTTAAT GTCAGCACAA GAGCAAACTT CACCCTAACA GTAAAGGCCC
  ACTCACTACC CAGAACCGCG AAAACACCAC AAAAATGAAT CTTACCTTAA CACTTCCTCC
  ACTGTTCAAC AGCAACGGGT CCCGGCGTTT CCTAGAAATA TTTCAATACT AGTTTAGAAA
  ACTGAAGTCC ATTTTTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60445531	NES15941778	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50774239					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445531	NES15941778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	227 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	1114 bp downstream
Rr397991	regulatory region 397991	677 bp downstream
Rr584523	regulatory region 584523	792 bp distal
Rr584524	regulatory region 584524	657 bp distal
Rr584525	regulatory region 584525	663 bp proximal
Rr584526	regulatory region 584526	1208 bp proximal
Rr584527	regulatory region 584527	1599 bp proximal
Snhg8	small nucleolar RNA host gene 8	within coordinates
Snora24	small nucleolar RNA, H/ACA box 24	226 bp downstream
Tssr31551	transcription start site region 31551	839 bp upstream
Tssr31552	transcription start site region 31552	877 bp upstream
Tssr35502	transcription start site region 35502	619 bp downstream
Tssr35503	transcription start site region 35503	1204 bp downstream