rs50774450 SNP Detail

Summary

• ID
  rs50774450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTAACGGC GTGCGCCACC ACCGCCCGGC ATCAGCTAGG
  CCCGCTCTAG GGACCTTACT GACAAGAGGT ATAGCCACAA CTTACCTCTT CCTTATGTCT
  Y
  CCGCACATTC CTCGCAGGGG TAAAACTTGG AAAATATATG TATGAACTGG GCCATATCCT
  GTTGTTGTTC TGGCGTGGGC CTGTCCGGGT AATAGGCGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552612	NES16570804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50774450					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552612	NES16570804	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	335 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	965 bp upstream
Rr523392	regulatory region 523392	427 bp proximal
Rr523393	regulatory region 523393	789 bp proximal
Rr523394	regulatory region 523394	1250 bp proximal
Tssr5034	transcription start site region 5034	1287 bp downstream
Tssr143060	transcription start site region 143060	1007 bp upstream
Tssr143061	transcription start site region 143061	1391 bp upstream
Tssr146764	transcription start site region 146764	718 bp downstream
Tssr146765	transcription start site region 146765	796 bp downstream
Tssr146766	transcription start site region 146766	852 bp downstream
Tssr146767	transcription start site region 146767	878 bp downstream
Tssr146768	transcription start site region 146768	928 bp downstream
Tssr146769	transcription start site region 146769	1236 bp downstream
Tssr146770	transcription start site region 146770	1272 bp downstream
Tssr146771	transcription start site region 146771	1300 bp downstream