rs50775116 SNP Detail

Summary

• ID
  rs50775116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50298018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAGGTAT TCAATGATTA AGTAAATAGG ATAACCCAGT
  CTATGAACAG TCAGCCTCAT TTTCTGTCTA TTCCTGTTAC TTCTTAATGG GCTCATGAAA
  R
  AAGTTCCATG TTAGCAGAGA TGGAGGTTAT TCATGGGCTA GATTTCCACT CATCAAAACT
  GTCATAGTTA CAACTGTTTC TGAGTGCCAG CTCTATCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss139454960	ENSMUSSNP766714	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss324615145	CHEV_14_50680236	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50775116					SNP	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50298018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	1119 bp proximal
Gm37194	predicted gene, 37194	799 bp upstream
Rr491685	regulatory region 491685	496 bp proximal
Tssr125363	transcription start site region 125363	796 bp upstream
Tssr125364	transcription start site region 125364	1719 bp upstream