rs50775457 SNP Detail

Summary

• ID
  rs50775457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87457352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGTTTG TTTTTCCTTG
  CTTAGCTGAC TCTTGCTTCG TAAGCACATG TTCTCAGTCC ATCTGGATGT TGCTTGGTAT
  TCAACTGAGT TCAGGGTGCA AGGGTTCCCG GACACTCCCA CTTTGATGTG AGAAGGTCTG
  CCCAGGCCTG AAATGTGTTC AGAAAGAACC TGAGAAGTGA TGTGGTCTTT CCATTTACCT
  Y
  GTTGTGGAGT AAGAGGAAAT CTACCCCATG GCTGATTCCA AAGTGTAGTT GTACCATTTA
  CTGTGGGAGT TGAAGTTCAA ATACACGCTG GGGTCAGAGG CAGGAGGACT ACTGCAAGTT
  CTGGTCTATA TAACAAGTTC TAGGGGGCTG GAGAGATGGA TCAGCGGTTA AGAGCTCTGA
  CTGCGCTCTT TCAGAGGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61664506	NES17606372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50775457					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61664506	NES17606372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87457352 () rs orientation: forward

Symbol	Name	Function Class
Gm33444	predicted gene, 33444	794 bp downstream
Rr258424	regulatory region 258424	249 bp proximal
Rr268858	regulatory region 268858	within coordinates
Rr387583	regulatory region 387583	117 bp upstream