rs50776645 SNP Detail

Summary

• ID
  rs50776645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12276107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACGCCCG GCATAACACT
  TTTTAATATA GAATTTTAGT ATATAGTACA GTTTGGCTTT GAATTAGCCT CCTGTGTCTC
  ACCAAGACCT GCAAAACACA ACATTTCTTT TTTCAGATTT TAAAAACAAA GGATAGTTCA
  GTAAGGTCAG TGATAGTTAA AGAGATTAAA AGCAGATGTA TCTAGAAAAA TAAAAAGATA
  Y
  ATAGAGCCAG GAGTATAGGG GTAGTGGTAC AGGCTCATAA TCCCAGCATT TAAGAGAATG
  AGGCAGTAGG TTTATGAGTT CCAGCCTAGC CTGGGCTACA TCGCAAGACT GTGTTCATAG
  GAAGAAAATA AGCACAGCAT TCCCATGTTA CTGTAAATAA CTACACCAGA GTTTTTATGT
  ATTTTATTAT TTTTTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61743551	NES17669048	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50776645					SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61743551	NES17669048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12276107 () rs orientation: forward

Symbol	Name	Function Class
Gm47021	predicted gene, 47021	951 bp upstream
Rr270765	regulatory region 270765	294 bp proximal
Rr270766	regulatory region 270766	1294 bp proximal
Rr387989	regulatory region 387989	4 bp downstream
Tssr121434	transcription start site region 121434	1017 bp upstream