rs50777300 SNP Detail

Summary

• ID
  rs50777300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66380192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACAGCT GTGGCCCCCA
  CACACTCACC CACCCCTTCT AAGTCACTCC CACGTCTAAC AAAACACTGT GCTTCAAAAC
  CTGACCCCCG CCCTCCCCCC AAAAAAAGAT GCCGGTGAGC TTTAAGATAG ACCTAAACTT
  TCATTTTTCT GGTTCCTTTT CCAAAATAAA ATCAAAGTAG CTCACTAGGT AATGGTGTCT
  Y
  TACCTATGCA GTGGGTCCTG CGTCCTAGAC GGAAGATATG AGTCTGTGTG GTATGTGGTA
  TGCAAGGGAC AGCTTTATTG TACAGCAGCA GCTGCCCTGT GCATACCTCA GAGAGGCTCC
  AAAGCTCTGT ACTTGGGCTA CAGCCACCAA ATGTTCCTTC TAGTCCCGCC CCGTGGTTCC
  CAGATGTATT TGCCTCGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174684	NES16683885	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50777300					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174684	NES16683885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66380192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15907	CpG island 15907	186 bp proximal
D5Dcr67	DNA Segment, Chr 5, Derry C. Roopenian 67	1675 bp distal
Rr612426	regulatory region 612426	1917 bp distal