rs50778146 SNP Detail

Summary

• ID
  rs50778146
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3286237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAACTAA GCTCCTGCAA
  GAGACATAGA TTTGCATGGG GTCTAAGTTT CATTGCTGCT CGTTTGCATG AATTTGAGTG
  AATTTGAATG GCTGCTTGGT TTTGTTCTAC CCAGGTTTAT ATAACCTCCC CTGACCTGTA
  TAAATTAGCA TATCGTGTAC GTTGGGAATT TGCATACGCT CATGTGACAT CAGTTTCGCA
  K
  GATGAAAATT TGCATAAATT TGCATAATGA CAGCTCCCCT GAGTAAATTT CCATAAACAT
  AAACGATGTT ATGGCTTTAC TCTGCGTGTA TTTGTCATGT AAATTTGCAT GCATTTGCAT
  AAAACTGCAT GACGTTATGG CTTTTCCTGA GTTCAGATGA TGTCACAGTT TCCCTCCTTG
  CCATTGACAC GTGTCCAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52277053	NES15359514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50778146					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52277053	NES15359514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3286237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	197 bp distal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	within coordinates
Rr256055	regulatory region 256055	1764 bp proximal
Rr265316	regulatory region 265316	within coordinates
Rr267101	regulatory region 267101	1937 bp proximal
Tssr112476	transcription start site region 112476	715 bp downstream
Tssr112477	transcription start site region 112477	436 bp downstream
Tssr112478	transcription start site region 112478	398 bp downstream
Tssr115578	transcription start site region 115578	940 bp upstream