rs50778158 SNP Detail

Summary

• ID
  rs50778158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94115096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTATAAGG CATCTTCTAA
  TGGACCCTGT AATTCCCCAG TTACTATCCA CTGCCATAGA GGGATGTGAC AGGCTGCCTT
  AAGTGTTAAC ATATAAACCC TGGTGATTCT CAGGGTAAGA AATAATACAA AGCTTTTGTC
  TACAGTGAAG TTATTCTGTT CACCTAAGAA TAATAATTTA TAACTTGAGT TCACTTGAAC
  Y
  CTCTTCAGGT TAGATTTCAA CCTAATTTTG ACACATCTAA ATATTTACAT GACTTTGTTA
  ATCTTCCTTT TCACCTTTGC ATTCAAAAGC TGAAAAAAAA GTTTCACAAG CTATACTGAC
  TTAACAATCA TGCTTTTATA TTATAAATTA AAACATATTG TTTATTGAAC AGTACAGCAT
  TTATTCCTGG AGTTATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60648928	NES16272816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50778158					SNP	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60648928	NES16272816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94115096 () rs orientation: forward

Symbol	Name	Function Class
Gm45765	predicted gene 45765	within coordinates
Rr382478	regulatory region 382478	42 bp downstream