rs50779522 SNP Detail

Summary

• ID
  rs50779522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14526569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGTCCC TGTAAGCGTC
  TGTAGAGGAA GTGCACCGTG AAGAAGACAC CACTTCTTCT AGTTGCTGTT ACTTCGGGCT
  TGTTGGGGAA ATCTTTGGTC TTCCTGCCCC TTGCCATACT AGGGACAGAA CCGATTGTCT
  TTCCTGTGCA CTAAGACATG GTTTGCTGTA CTTAGAGCAA ACCCAACCCT GAAGTGAGAG
  Y
  CTCCTCAGTG GTAAAGGAGC CCTGCCCAAG TTAGGAGTGG CCAGTGGACT GGCATGCTGC
  CAGGAACTCT GGCCAAAGCA GTGCCCTCCA TAAAACCACC CCCTCAGTGG CGTGGGTCCT
  GCCAGATGCC CTTGGCACAC CCAGCCTGAC TCCCTGCTTC CCTCTGAGCC AGTACTTTGC
  TCTTGGATGA GATCTACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62080595	NES17154326	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50779522					SNP	C	T	T	T	T	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080595	NES17154326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14526569 () rs orientation: forward

Symbol	Name	Function Class
Flnb	filamin, beta	Intron
Gm62553	predicted gene, 62553	within coordinates
Rr487920	regulatory region 487920	1293 bp distal
Rr487921	regulatory region 487921	1623 bp distal
Rr487922	regulatory region 487922	within coordinates
Rr487923	regulatory region 487923	1409 bp proximal
Tssr124220	transcription start site region 124220	1545 bp downstream