rs50779954 SNP Detail

Summary

• ID
  rs50779954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30815774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTCTC TGACTCCATC
  CATCCTTGCT CTGTCTTAGT GTATTGCCCT TCCACCCCCC CCCCCCCAAA CTTTTACTCT
  CAGTTTTCAG AGTATAGCAA GACCTACAAA ACCCTGACAT ACAGTTGTCT GTCCTGAGGA
  TTCCAAAGCC ACCTCTGTCC TGCGTCTTAC TCCATGAAAT AATGACTCTC AGAGTCCCAG
  Y
  ATTAACTAAG CTCGAAGCCA CTTCAACAGC TCCGGGTGGC ACCCTAAATG TGGCAGAGTA
  GTTGCTGCTT GCTGGGAATG AAGATTCCCA AGAAACATGT TTCATCACGA GGCCCAGTGG
  TCAGGGCTGA AGGATGTAGT GGGAGGCTGA GAGTGTTAAT GAGAGAATAG AGACTCGAGT
  CCAAGAATCT TTATTTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148699933	ENSMUSSNP1195351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322139446	CHEV_7_31901368	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50779954					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30815774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	225 bp distal
Hpn	hepsin	1059 bp upstream
Rr645021	regulatory region 645021	1078 bp distal
Rr645022	regulatory region 645022	569 bp distal
Rr645023	regulatory region 645023	247 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	175 bp downstream
Tssr71932	transcription start site region 71932	1633 bp upstream
Tssr71933	transcription start site region 71933	1041 bp upstream
Tssr71934	transcription start site region 71934	543 bp downstream