rs50780309 SNP Detail

Summary

• ID
  rs50780309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAACGTCA TCATCTCTAC
  CTACGGCGAG GGCGAGAGTG GGCCCATGGG CAATATCATG GTGCGAAGCT CTTCTATGGG
  GGGCGGTCAG GGCCACGCTC CCTGGGAATC TCTGACCCAC CATGATGACG GAAATTCTTC
  ACTTTGACCT GATGTCTGTT GAAGAAACTC AGTGTCTGAG ACTGTGGGCT TGTGGCTGGG
  Y
  TGGCTGCTGA CCATCTTGCC GGGCTAACTG CTGCTCTCCT CCCTCAGATT GACCCCGTCC
  TGGGCACCGT AGGCTTTGGT TCTGGCCTGC ATGGCTGGGC CTTCACCCTG AAGCAGTTTG
  CGGAGATGTA TGTGGCCAAG TTTGCAGCCA AGGGTGAGGG CCAGCTGAGC GCAGCCGAGC
  GTGCCAAGAA AGTAGAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388481	NES15267095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50780309					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388481	NES15267095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	857 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	1964 bp upstream
Rr435543	regulatory region 435543	1975 bp distal
Rr435544	regulatory region 435544	1474 bp distal
Rr435545	regulatory region 435545	642 bp proximal
Rr435546	regulatory region 435546	1134 bp proximal
Snord37	small nucleolar RNA, C/D box 37	20 bp downstream
Tssr94696	transcription start site region 94696	1296 bp downstream
Tssr94697	transcription start site region 94697	1196 bp downstream
Tssr94698	transcription start site region 94698	945 bp downstream
Tssr94699	transcription start site region 94699	117 bp upstream
Tssr94700	transcription start site region 94700	301 bp upstream
Tssr94701	transcription start site region 94701	361 bp upstream
Tssr94702	transcription start site region 94702	538 bp upstream
Tssr94703	transcription start site region 94703	601 bp upstream
Tssr94704	transcription start site region 94704	620 bp upstream
Tssr94705	transcription start site region 94705	648 bp upstream
Tssr94706	transcription start site region 94706	840 bp upstream
Tssr94707	transcription start site region 94707	890 bp upstream
Tssr94708	transcription start site region 94708	955 bp upstream
Tssr94709	transcription start site region 94709	1209 bp upstream
Tssr98570	transcription start site region 98570	345 bp downstream
Tssr98571	transcription start site region 98571	713 bp downstream