rs50780472 SNP Detail

Summary

• ID
  rs50780472
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59525989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GAGCGTCTGT AAGTTTGAGC
  R
  TCTGCATAGG CCCTCCAACC AGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132238225	ENSMUSSNP3339984	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50780472					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59525989 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	616 bp downstream
Rr448217	regulatory region 448217	1669 bp distal
Rr448218	regulatory region 448218	1925 bp distal
Rr448219	regulatory region 448219	801 bp proximal
Rr448220	regulatory region 448220	1295 bp proximal
Tssr101856	transcription start site region 101856	967 bp downstream