rs50780788 SNP Detail

Summary

• ID
  rs50780788
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109749977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA TTTTGGCCCA GTCTTAGGTG
  K
  TGTTGATGCC TGGAAAGACC CTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147206228	ENSMUSSNP5004540	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320456106	CHEV_2_109759789	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50780788					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109749977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	771 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr397176	regulatory region 397176	1973 bp downstream
Rr562509	regulatory region 562509	1975 bp distal
Rr562510	regulatory region 562510	46 bp distal
Rr562511	regulatory region 562511	1848 bp distal
Rr562512	regulatory region 562512	1809 bp distal
Rr562513	regulatory region 562513	1421 bp distal
Rr562514	regulatory region 562514	389 bp proximal
Tssr19308	transcription start site region 19308	1994 bp downstream
Tssr19309	transcription start site region 19309	1976 bp downstream
Tssr19310	transcription start site region 19310	1946 bp downstream
Tssr19311	transcription start site region 19311	1896 bp downstream