rs50781234 SNP Detail

Summary

• ID
  rs50781234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104696619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGCGA GGCGTCGTGG
  GAACTGACCT CGGAGGAGAG CACTTTCCCG ATTCCCGGAT CGCTCCGGGA GCGGCTTGGG
  GGGCGGGGGG TGTTCCGGGC CAGGCAAGAG AGAGCGCCCC AAGCTGTGGG CCAGGCGCTC
  TAGCCTTCCA AGCTCTCGAA CCAGAGCCCA GAGTCCTTCC CTTTCTGAGT CTTTCCTTTC
  Y
  GGACCTCCCT AGCTGGGCCA GGGACACACT TAGATCTCCG TGAGCGACTC AACCCAGACG
  CTCCAGTTCC GGGCAGGGAG TAAGAAACAG GGCCTCAGGC TGGCTAGGGG TGGGAGTTCT
  GGCCTGGGAT GGGGAATGGC GGGAATAGGG ATGGGATGTG ACCACTGGAG GCTGCTACTG
  CTTGGCGGGT CTGGACGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60431847	NES15936375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs50781234					SNP	T	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431847	NES15936375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104696619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	within coordinates
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31056	transcription start site region 31056	708 bp downstream
Tssr31057	transcription start site region 31057	462 bp downstream
Tssr31058	transcription start site region 31058	448 bp downstream
Tssr31059	transcription start site region 31059	257 bp downstream