rs50781878 SNP Detail

Summary

• ID
  rs50781878
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:45008038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT AAGGCAATAT GCAAATTGTT
  T
  GTACTTATAA ATAAATTATT TTAAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146484898	ENSMUSSNP2127369	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320273564	CHEV_2_44973546	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50781878					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45008038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	469 bp distal
Gm28643	predicted gene 28643	179 bp upstream
Rr373117	regulatory region 373117	376 bp downstream
Rr556444	regulatory region 556444	642 bp distal
Rr556445	regulatory region 556445	165 bp distal
Tssr17636	transcription start site region 17636	742 bp downstream
Tssr23988	transcription start site region 23988	1028 bp upstream
Tssr23989	transcription start site region 23989	681 bp upstream
Tssr23990	transcription start site region 23990	651 bp upstream
Tssr23991	transcription start site region 23991	615 bp upstream
Tssr23992	transcription start site region 23992	510 bp upstream
Tssr23993	transcription start site region 23993	487 bp upstream
Zeb2	zinc finger E-box binding homeobox 2	631 bp upstream