rs50782482 SNP Detail

Summary

• ID
  rs50782482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCCAG TCCCTCTGCT
  CTGTTGGCCT TGCTGGCGAG GAGGGGCACG GTGCCTTCAC TGCCTGAGCA CCCAGTGCGC
  GAGGCTGACC TGAAACACCA GCCAATTCTC ATGGTAGGCT CTGCTCCTGA CCTATGAAGC
  CCTGCCTACC AGGCTTGGCT CCTCCCCTTT GCACTTTCCT GCAAAGTTTC TAGCTTGTGC
  Y
  TGAACCTCCC TTCAGGCTCT ACCCACTAAT TCTCGTTACA CTCCCCAAAT GGTTCCTCTA
  GCCATGCCCT CAAGCTCAGC CCATTAGGTG TAGCTCCTCC AACCAGTTTT AGCCCCTCCC
  ACAAAGCTTA GCTCCCCCTA TCAAGCCTAC CTCCATTTTC CAAGCCTAGC TTTTCCATCA
  AGCTAAGGGT GTCACACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076723	NES16055125	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50782482					SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076723	NES16055125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648183 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	Intron
Rr381636	regulatory region 381636	within coordinates
Rr658946	regulatory region 658946	1121 bp proximal
Tssr76064	transcription start site region 76064	1659 bp downstream
Tssr76065	transcription start site region 76065	132 bp upstream
Tssr76066	transcription start site region 76066	156 bp upstream
Tssr76067	transcription start site region 76067	171 bp upstream
Tssr76068	transcription start site region 76068	188 bp upstream
Tssr76069	transcription start site region 76069	260 bp upstream
Tssr76070	transcription start site region 76070	410 bp upstream
Tssr76071	transcription start site region 76071	459 bp upstream
Tssr76072	transcription start site region 76072	1338 bp upstream