rs50783638 SNP Detail

Summary

• ID
  rs50783638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGGGCTCC GGCCAAAAAT TATGGCTGTG CGCCCGGAGG
  ATCCTGGATA ACGGAGTTCT TCCCACCGCA AATGGGAACC ACGATCTCGG ATTGTGGTTC
  Y
  AGACGCCCAA AATAATTTCC GGGTATCTCT CTGATCTTTG GGCTTATATT TTTTGGTCGT
  CAGATCCGGG ATGGTAAGGA GTGTTCTGGA GGGGCTGACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991872	NES16142336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50783638					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991872	NES16142336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894188 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1734 bp distal
Cpgi18782	CpG island 18782	722 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1874 bp upstream
Rr400232	regulatory region 400232	858 bp downstream
Rr400233	regulatory region 400233	272 bp upstream
Tssr65662	transcription start site region 65662	806 bp downstream
Tssr71696	transcription start site region 71696	1833 bp upstream
Tssr71697	transcription start site region 71697	1812 bp upstream
Tssr71698	transcription start site region 71698	1781 bp upstream
Tssr71699	transcription start site region 71699	1655 bp upstream
Tssr71700	transcription start site region 71700	1620 bp upstream
Tssr71701	transcription start site region 71701	1396 bp upstream
Tssr71702	transcription start site region 71702	944 bp upstream
Tssr71703	transcription start site region 71703	730 bp upstream
Tssr71704	transcription start site region 71704	623 bp upstream
Tssr71705	transcription start site region 71705	601 bp upstream
Tssr71706	transcription start site region 71706	257 bp downstream
Tssr71707	transcription start site region 71707	269 bp downstream
Tssr71708	transcription start site region 71708	283 bp downstream
Tssr71709	transcription start site region 71709	458 bp downstream
Tssr71710	transcription start site region 71710	800 bp downstream