rs50783643 SNP Detail

Summary

• ID
  rs50783643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGACAAG TCCTTGCATT
  GGCAAGTGGT GTACAGGTGG CCAAGACGGC CATAACCACG CCTAAGGATA CGTTTTCATC
  ACCCTAGTTA CCTCCAGAAA AAGCCAGACC CCCCCTAACA CAGGAAGAAC CCCAGTAAGG
  AACACACCAA GCTTGCAGCT CTCCCACTCC TAGGCTCCAG TAGACCCTAA GCTTGGAGAT
  Y
  AGGGTGCACA GACCCTGCAC GTGGACACAC TTCCATGTCC AGTCGCCAGC ACCGAGAAAC
  CTGAGCCTTA CAAAGGTGAT CACAGCCACT CGTGTTCCCC AGCAAACACG CTCTAGCGCA
  GGGGAAGGCA GCCTCTCCCA GTCGTCCTCC CCCCGACCCC CGCACGCACC TTCGTGTTGG
  CAGCGGGCCG TCCCAGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147285243	ENSMUSSNP3959976	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50783643					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1239 bp upstream
Gm26330	predicted gene, 26330	112 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	889 bp downstream
Rr398411	regulatory region 398411	518 bp upstream
Rr598069	regulatory region 598069	832 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	827 bp upstream
Snord55	small nucleolar RNA, C/D box 55	370 bp downstream
Tssr38607	transcription start site region 38607	1563 bp downstream
Tssr42956	transcription start site region 42956	443 bp downstream
Tssr42957	transcription start site region 42957	674 bp downstream
Tssr42958	transcription start site region 42958	721 bp downstream
Tssr42959	transcription start site region 42959	743 bp downstream
Tssr42960	transcription start site region 42960	784 bp downstream
Tssr42961	transcription start site region 42961	798 bp downstream