rs50783711 SNP Detail

Summary

• ID
  rs50783711
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49590923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTTTT CTTTTCTTTT
  CTTTTCCTTT TCTTTTCTCT TCTCTTCTTT TCTTTCTTTC TTTTTTTTTT TTGAGGGATT
  TCATCATGTA GCCATGAAAA CCTCAAAGTT CTAGGAAACT GCAAACTATT TGGAAACTCT
  GTGCCAACCG TTACAGCCAA AGGTCAGACT TATTTCTTCC TATGTCACAA TTTCTCGGCT
  M
  AGAATTTCCT GTGTGGCTTT TGAGTCACCG TTCATCCTGG GTTTTCTCCG GTAAGGTGAT
  AGAGTTATAT TTTCCCTCCT GTCCAGTCGC TTTTCTTTTA CCTTCTGTAA AATCTTCTGC
  AGGGTATGCT ACCCATGAAT CCCAATGTGC TAGTAAAAGT ACAAAGTTGT TCATACAGCC
  ACCGGTAGTG CTGGGATATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460815	NES16446450	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	A	A	A	A	A	A	A	A
ss148122744	ENSMUSSNP1580386	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50783711					SNP	C	C	A	A	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460815	NES16446450	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49590923 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516710	regulatory region 516710	1752 bp distal
Rr516711	regulatory region 516711	208 bp distal
Rr516712	regulatory region 516712	780 bp proximal
Rr516713	regulatory region 516713	1857 bp proximal
Tssr138713	transcription start site region 138713	52 bp upstream
Tssr141324	transcription start site region 141324	1851 bp upstream
Tssr141325	transcription start site region 141325	1822 bp upstream
Tssr141326	transcription start site region 141326	1781 bp upstream
Tssr141327	transcription start site region 141327	1758 bp upstream
Tssr141328	transcription start site region 141328	738 bp upstream
Tssr141329	transcription start site region 141329	230 bp downstream
Tssr141330	transcription start site region 141330	245 bp downstream
Tssr141331	transcription start site region 141331	258 bp downstream
Tssr141332	transcription start site region 141332	286 bp downstream
Tssr141333	transcription start site region 141333	1121 bp downstream
Tssr141334	transcription start site region 141334	1276 bp downstream