rs50783852 SNP Detail

Summary

• ID
  rs50783852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32733307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGCATT TCTGAACCAG
  CTCTCTCAAC CGCGACAGGT CAGCCAATCC CGGCAGTAAG CTTTTACTTG ACAGGTTTGT
  TCTGGGCTGA CAGCCATTGA CTAGGTGCTC AGATAAGTCA CTTGGCTGAG TCTACGGTAG
  GTGGGGCGCG CTCACCAGTT CAGGGGCAGT GACTGGAAGT TTGTTGCAAC ATCGGTAAGC
  Y
  TAACCAGCCA GCAGCAACAG GAGATACCCT TTTGCCCCGC GAGTACAGAT CTAGAAAGGG
  TTCACCTCAT TAAGCGAAGG AGATGCGTCA ATCCCCCCCA CCCCCGCCCC GCGCCTCCCC
  CTAGGGCCCG GCCTCTTCTC CCACGGTTGG GAACGCGCGG TGTGGGCAGA TCCAGAACAG
  GAGTCTCGTG TCCCGGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63251622	NES17476681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50783852					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63251622	NES17476681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32733307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	130 bp proximal
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	within coordinates
Gm56643	predicted gene, 56643	642 bp downstream
Gm58496	predicted gene, 58496	1646 bp upstream
Gm58497	predicted gene, 58497	1797 bp upstream
Pten	phosphatase and tensin homolog	1670 bp upstream
Rr370485	regulatory region 370485	1273 bp downstream
Rr370486	regulatory region 370486	469 bp upstream
Rr405924	regulatory region 405924	107 bp downstream
Tssr5485	transcription start site region 5485	1577 bp upstream
Tssr5486	transcription start site region 5486	1773 bp upstream
Tssr5487	transcription start site region 5487	1819 bp upstream
Tssr155991	transcription start site region 155991	986 bp downstream
Tssr155992	transcription start site region 155992	1669 bp upstream
Tssr155993	transcription start site region 155993	1697 bp upstream
Tssr155994	transcription start site region 155994	1740 bp upstream
Tssr158898	transcription start site region 158898	502 bp downstream
Tssr158899	transcription start site region 158899	1415 bp downstream
Tssr158900	transcription start site region 158900	1462 bp downstream