rs50784170 SNP Detail

Summary

• ID
  rs50784170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65139864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGTCGT GGTAGCGCCT
  GTAGTCTCCA GGCCTGAGCA GGTATTGGCG GCCTCGGTAG TTGGGCATCT CATAGAGGAC
  CCAGCAGCCC TCCAGCACGT GCATGGAGTA GATCTCATGG AGGCGGAAGC GATCGTGGAT
  GCAGGAACAG TCGTCCATGA GCTCAGACAC AAGGCCCCGG TAGTCATCTC TCTCATAAAG
  Y
  CTTATCCTGT GAGAGCTGGT CTGTTGTTAG GAAGACAGAA GAGGAAAAAC AATGATTTAC
  ACACGGTGTC GCAGCCTGCT TGCCCCGTCC CAAAACACAG CTTTCGGGCG AATCTGTCAA
  GTGTTCGTCT TCCCTAAGCC TACTCCGTGT GCTGTTGTTG TAACAAATTA GGAGATGCAC
  TAACATAAAG TTGACCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60744602	NES16381379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50784170					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744602	NES16381379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65139864 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	53 bp downstream
Tssr7112	transcription start site region 7112	307 bp downstream
Tssr7113	transcription start site region 7113	189 bp downstream
Tssr7114	transcription start site region 7114	175 bp downstream
Tssr7115	transcription start site region 7115	163 bp downstream
Tssr7116	transcription start site region 7116	101 bp downstream
Tssr7117	transcription start site region 7117	62 bp downstream
Tssr7118	transcription start site region 7118	9 bp downstream
Tssr11968	transcription start site region 11968	258 bp upstream
Tssr11969	transcription start site region 11969	235 bp upstream
Tssr11970	transcription start site region 11970	67 bp upstream
Tssr11971	transcription start site region 11971	43 bp upstream
Tssr11972	transcription start site region 11972	22 bp upstream