rs50784625 SNP Detail

Summary

• ID
  rs50784625
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126360042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGGCC AACAGGCCTG
  GATTCCCCCT TTGTAAGGCC ACATCTCTCT GGCCCTCTCA GCTCAGCTTA TGACCACGTG
  CGCAAGACCA GAGTGGCCAT CAAGAAGATC AGCCCCTTTG AGCATCAAAC CTACTGTCAG
  CGCACGCTGA GGGAGATCCA GATCTTGCTG CGATTCCGCC ATGAGAATGT TATAGGCATC
  M
  GAGACATCCT CAGAGCGCCC ACCCTGGAAG CCATGAGAGA TGTGTATCCT TCACCTTAGC
  CACAGCCCCA GAGTAAAGCT AGGGAGCTTG GCTCTGTTGT CTGTGGTCAT CTTTTGTACT
  ACCCTCCAAA AAAAAAAAAC CCCAGCAAAG TAACTTTTTA GCAGAGAGTC TACAGAGCAT
  GAGAGCACAC TGGCAGGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145876375	ENSMUSSNP3485898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50784625					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126360042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19709	CpG island 19709	532 bp distal
Mapk3	mitogen-activated protein kinase 3	within coordinates
Rr655591	regulatory region 655591	1259 bp distal
Rr655592	regulatory region 655592	263 bp distal
Rr655593	regulatory region 655593	1645 bp proximal
Tssr69058	transcription start site region 69058	1262 bp downstream
Tssr69059	transcription start site region 69059	1219 bp downstream
Tssr69060	transcription start site region 69060	1160 bp downstream
Tssr69061	transcription start site region 69061	1108 bp downstream
Tssr69062	transcription start site region 69062	1081 bp downstream
Tssr69063	transcription start site region 69063	271 bp downstream
Tssr69064	transcription start site region 69064	217 bp downstream
Tssr69065	transcription start site region 69065	126 bp downstream
Tssr69066	transcription start site region 69066	1347 bp upstream
Tssr69067	transcription start site region 69067	1999 bp upstream