rs50785428 SNP Detail

Summary

• ID
  rs50785428
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT CACGTAGCCC AGGCTGGACT
  C
  AAACTCACTG TGTATCTGAG GGTGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148324323	ENSMUSSNP1281016	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320620560	CHEV_2_172680706	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50785428					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696998 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	849 bp distal
Rr571756	regulatory region 571756	651 bp distal
Rr571757	regulatory region 571757	1048 bp proximal
Rr571758	regulatory region 571758	1983 bp proximal