rs50785788 SNP Detail

Summary

• ID
  rs50785788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26751934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGAGTAA GAGCCTCTGT
  CAACAAAACA AAACAAAACA AAACAAAACA AAACAAAACA AAACACACCA AAAAGCAGAA
  GTCAGAGATA AGGCACTAAA GAGAGCTGTG ACCACAGCAG TGTCCCCACG TGCAAACCAC
  AGCTGGCTTC CTCTCACTCT GCTCAGACCT CTTCACCTCA CCTAGCTCTG CAGTCCCCTC
  Y
  TGCCCGGTGC TTGTCCTTGT GTGGCTCCTG CGGATGAGCC AGCCTCAGCC TCATTCATAT
  CCAGACTCTG GCTCCAGGGC CACTGCGCTC ACCCCAGCCT CTGTTTTCCC AAGAACTCCA
  ACCTTCCTGC CCTCAGGGAA CTCAGGACTC CCAGAAGAAG GGAGAGGGAG AGCAACACTC
  ATGCTTGCCT AGCCGTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554844	NES16569775	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50785788					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554844	NES16569775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26751934 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	1121 bp downstream
Tssr143240	transcription start site region 143240	74 bp downstream
Tssr143241	transcription start site region 143241	60 bp downstream
Tssr143242	transcription start site region 143242	30 bp downstream
Tssr143243	transcription start site region 143243	5 bp downstream
Tssr143244	transcription start site region 143244	5 bp upstream
Tssr143245	transcription start site region 143245	1165 bp upstream
Tssr146959	transcription start site region 146959	1263 bp upstream
Tssr146960	transcription start site region 146960	343 bp upstream
Tssr146961	transcription start site region 146961	313 bp upstream
Tssr146962	transcription start site region 146962	284 bp upstream
Tssr146963	transcription start site region 146963	237 bp upstream