rs50785801 SNP Detail

Summary

• ID
  rs50785801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:91634164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAGGAA ATCAACAGAA
  ATCAACAGTG ATTTGCCAGC TTTGAGATGT CCTGCTCAAC CGAATAGGGC TTGAGCCCTA
  ACCTCTGGCA CAGCCCTGCG GACTGAGCAG CAGCTGTCTG AATCTGAGTG GCTTATGAGA
  GAGTAGAATA GGACACGAGA GAGCAGCAGA TGCCCCCTTA GTATCCATTC GGAAGCGTTT
  R
  TCTACCAGCT CACAGCAAGA CTCATCTTAA CCAGCATGGG ATACCCATCT GCACGTGTTG
  AGAACTGAAG CTAGCAGCAG GTATCAAGTC ATTCAGAGGG AGCCAGCCTA GTGAGGTAGG
  ACCAAAATAG CACAGCTTTC TCGGTACAGG AGGGTTCTTC CTCGGAGGCT CAAGTGCACC
  TAAGATTTTA ATATAGATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61672037	NES17617434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50785801					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61672037	NES17617434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:91634164 () rs orientation: forward

Symbol	Name	Function Class
Gm51993	predicted gene, 51993	within coordinates
Gm59627	predicted gene, 59627	within coordinates
Rr470642	regulatory region 470642	259 bp proximal
Rr470643	regulatory region 470643	488 bp proximal
Rr470644	regulatory region 470644	899 bp proximal
Ston2	stonin 2	within coordinates
Tssr114594	transcription start site region 114594	373 bp downstream
Tssr114595	transcription start site region 114595	1394 bp upstream