rs50785875 SNP Detail

Summary

• ID
  rs50785875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25759326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTACTGT GATGAGAGGT
  TTTTACCAGG CTGGAGGCCA CTCATCCAGG AGTTTTCCTA TTCTAGCCCA GGAACTGTTG
  CATTCCAGGA AAGCCTTTGT TTTCCTGGTA AACACTGGTA GTTGATCATC ATCACGCTCC
  ACTAGCACAG AGGTACTTGG AACCAGGATC ATACATAGGG CCTGGAACTT ATGGTAGCTT
  Y
  TAGCGGGGAC TGCAGCTCCG GATTGGAACC AGCTGCTGTC ACGGGATCTG TGCGCAGTGA
  AGAAGTCGGT GGGGAAGAGA GACGTGTGGC TATCATCCGT TCGATAGTCT TTCACTCGGA
  TAAGTGCAGA AGCTATTTCT TGGCCTGGTT GCCATCAACA GGACACCAGC CCGTGGCTGC
  TGCCATTCCT CCCAAAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52193804	NES15225020	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50785875					SNP	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193804	NES15225020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25759326 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	245 bp upstream
Gm66740	predicted gene, 66740	452 bp upstream
Rr218979	regulatory region 218979	326 bp distal
Rr218980	regulatory region 218980	within coordinates