rs50786993 SNP Detail

Summary

• ID
  rs50786993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28949159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGCTA CTTCAAGGAT
  CAAGGTGGCC ATGTGCCACC TTGGATGCCT GCTTAATGTC CATTTGCAGA AATGCCTGCA
  CTGGTCATGC AGGCTCCACG CGTGTCATTC CAGCACATAC TTGGTGCTTC CCATTACCTG
  AAAAACTTTA TTTTTAAATG TGTGTGTGTG TGTTTGTGGA GGCCTGCTGC TGTCTGTGGA
  R
  GCCATCCTTG GGTTTGAGCC ACTAGAACAA CAAATACCCC TAACCACCTT CTAGCACCTT
  ACCTCTTTAC AGTTTAAATT CTTCCCTATA ATGATGTTTG CCTATGTATG CACACCTATT
  CATGCCTGCT GCCTGAAGCC AGAAGGCAGT ACAGGGGTCC CTGGAGCTAG GGTTACCCTT
  GTGAGCCACC ATGTAGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986958	NES16139342	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50786993					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986958	NES16139342	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28949159 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	1267 bp upstream
Cpgi18753	CpG island 18753	1548 bp distal
Gm73451	predicted gene, 73451	1549 bp downstream
Tssr71636	transcription start site region 71636	1989 bp upstream
Tssr71637	transcription start site region 71637	1795 bp upstream
Tssr71638	transcription start site region 71638	1762 bp upstream
Tssr71639	transcription start site region 71639	1310 bp upstream
Tssr71640	transcription start site region 71640	1266 bp upstream
Tssr71641	transcription start site region 71641	1201 bp upstream