rs50787069 SNP Detail

Summary

• ID
  rs50787069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151248442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGTAGG GGTCACTACA
  ATATGAAGAA CTGTTATTAA AAGGTCACAG CATTAGGAAA GTTGAGAACC ACTAATCTAA
  AAGAAGAAAA GATACACTCT GAATATAGTA GGTTAAGCCT CAATGAGTAA ATCCCTCTAA
  CTCAAAATAA GAAAACCCTT TATTAGTGGC CAAGCACTCT GTTCATGACA ATTAATTCAA
  W
  TACTAAGAAG ATACTTCTAA AACTGCAACT TGAAGTTTTT TTTAATATTT ATTTATTTAT
  TATATGTAAG TACACTGTAG CTGTTTTCAG ACACTCCTGA AGAGAGCATC AGATTTTGTT
  ATGGATGGTT GTGAGCCACC ATGTGGTTGC TGGGACTTGA ACTCAGGACC TTTGGAAGAG
  CAGTAGGCGA TCTTAACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60818962	NES16490638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50787069					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60818962	NES16490638	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151248442 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			697 bp distal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant