rs50787605 SNP Detail

Summary

• ID
  rs50787605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137878747 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GTTCCCACCT TGATGATAAT GGACTGAACC TCTGAACCTG
  TAAGCCAGCC CCAATAAATG TTGTTTTTTT ATAAGACTTG CCTTGGTCAT GGTGTCTGTT
  Y
  ACAGCAGGAA AACCCTAACT AATACAAAAG TTGGTACTGG GAGTGGGATA TTACTGTGAT
  AGGCCTGACC ATGCTTTTAT TTGAAAGAAT GTGGATTTTG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135386579	ENSMUSSNP4809942	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50787605					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137878747 () rs orientation: reverse

Symbol	Name	Function Class
4930579F01Rik	RIKEN cDNA 4930579F01 gene	Intron
Rr586090	regulatory region 586090	194 bp distal