rs50788157 SNP Detail

Summary

• ID
  rs50788157
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28908145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTAAAA CCATAAGACA
  AAATTCACTT CCAATTAAAA AAAAAAAAAA AAAAAAGCAC TTGTATTTCC CAACCAAAAA
  CCTCATTGCC TGTGACTCTC AGTTTTGGTG GAGAATGTAT TGGGGATGGT CTAGTGGCAG
  GAGATGCTTG AAGGTGGCAG CCCTCCAGCT GCTGACAGGT CACATAAACA CCTTCCCTTA
  W
  TGCTAGTCAG TGTGATACCA AGCAGGTGTG GTAGAGAGAT CCTCATTACT GGGCTGAACA
  GTGGAGACTT CATGGGGGGA CCCAAAGTCC AGCAATAAGG ACTAGAAGAC AGAGAAGGAG
  GAGAGGGGAC AGAGGGTGGG CTTAAGGCAG AGAGAACAAA ATGAGCAGAA CAGTAAAGTC
  TGGAAGCAAA GGGGGCCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60560560	NES16578126	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50788157					SNP	A	A	A	A	A	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60560560	NES16578126	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28908145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8895	CpG island 8895	198 bp proximal
Cpgi8896	CpG island 8896	1582 bp proximal
Rr370201	regulatory region 370201	1955 bp upstream
Rr524631	regulatory region 524631	282 bp proximal
Rr524632	regulatory region 524632	614 bp proximal
Rr524633	regulatory region 524633	1668 bp proximal
Slc26a8	solute carrier family 26, member 8	within coordinates
Tssr147147	transcription start site region 147147	587 bp downstream
Tssr147148	transcription start site region 147148	597 bp downstream
Tssr147149	transcription start site region 147149	612 bp downstream
Tssr147150	transcription start site region 147150	1974 bp downstream