rs50788409 SNP Detail

Summary

• ID
  rs50788409
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86180801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTGAGAAC ACTGTCACCA CTAAGGTGCC TTTTACATCT
  TTGTCAAACC TCAGTTGGGA TGGTGTGTTT CTAAGTTTTG TTCTATTCCA TGAATTTATA
  C
  ATCTGTCCTT CTGATAGCTT CTCATGGTAT TGATCATTGT AACTGTGTAG AAACCTGGAG
  TTAGGTAGGC AGATTTCTCC AGCTTTTTCT CTTTTAAGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135445817	ENSMUSSNP579591	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320829507	CHEV_3_86077416	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50788409					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86180801 () rs orientation: forward

Symbol	Name	Function Class
Gm26343	predicted gene, 26343	1738 bp downstream
Lrba	LPS-responsive beige-like anchor	Intron